ipa_utils
Utilities for implementing Iterative Pairing Algorithm (IPA) routines using DiffPaSS.
Type aliases
BootstrapList = list # List indexed by bootstrap iteration
GradientDescentList = list # List indexed by gradient descent iteration
GroupByGroupList = list # List indexed by group index
IndexPair = tuple[int, int] # Pair of indices
IndexPairsInGroup = list[IndexPair] # Pairs of indices in a group of sequences
IndexPairsInGroups = list[IndexPairsInGroup] # Pairs of indices in groups of sequencesget_robust_pairs
get_robust_pairs (bootstrap_results:diffpass.base.DiffPaSSResults, cutoff:float=1.0)
Get robust pairs of indices from a DiffPaSSResults object.
| Type | Default | Details | |
|---|---|---|---|
| bootstrap_results | DiffPaSSResults | E.g. results of a run of DiffPaSSModel.fit_bootstrap |
|
| cutoff | float | 1.0 | Fraction of iterations a pair must be present in to be considered robust |
| Returns | list | Robust pairs of indices in each group of sequences |